Publications
†Equal contribution
Hurt, RC.†, Buss, MT.†, Duan, M.†, Wong, K., You, MY., Sawyer, DP., Swift, MB., Dutka, P., Barturen-Larrea, P., Mittelstein, DR., Jin, Z., Abedi, MH., Farhadi, A., Deshpande, R., Shapiro, MG., “Genomically mined acoustic reporter genes for real-time in vivo monitoring of tumors and tumor-homing bacteria“, Nature Biotechnology , 2023
Sawyer, D., Bar-Zion, A., Farhadi, A., Shivaei, S., Ling, B., Lee-Gosselin, A., Shapiro, MG., “Ultrasensitive Ultrasound Imaging of Gene Expression with Signal Unmixing“, Nature Methods, 2021
Farhadi, A., Sigmund, F., Westmeyer, GG., Shapiro, MG., “Genetically Encodable Materials for Non-Invasive Biological Imaging“, Nature Materials, 2021
Farhadi, A.†, Bedrossian, M.†, Lee, J., Ho, G., Shapiro, MG., Nadeau, J., “Genetically Encoded Phase Contrast Agents for Digital Holographic Microscopy“, Nano Letters, 2020
Farhadi, A., Ho, G., Sawyer, D., Bourdeau, RW., Shapiro, MG., “Ultrasound Imaging of Gene Expression in Mammalian Cells“, Science, 2019
Science Magazine perspective: Ultrasound can ‘see’ when tumor cells turn genes on and off
Caltech News: Researchers Make it Possible for Ultrasound to Reveal Gene Expression in the Body
Nature Reviews Genetics highlight: A sound strategy for gene expression
Nature Methods feature: Bubble vision
Lu, GJ.†, Farhadi, A.†, Mukherjee, A., Shapiro, MG., “Proteins, Air and Water: Reporter Genes for Ultrasound and Magnetic Resonance Imaging“, Current Opinion in Chemical Biology, 2018
Lu, GJ., Farhadi, A., Szablowski, J., Lee-Gosselin, A., Barnes, S., Lakshmanan, A., Bourdeau, RW., Shapiro, MG., “Acoustically Modulated Magnetic Resonance Imaging of Gas-Filled Protein Nanostructures“, Nature Materials, 2018
Bourdeau, RW., Lee-Gosselin, A., Lakshmanan, A., Farhadi, A., Kumar, S., Nety, SP., Shapiro, MG., “Acoustic Reporter Genes for Noninvasive Imaging of Microbes in Mammalian Hosts“, Nature, 2018
Farhadi, A., Ho, G., Kunth, M., Ling, B., Lakshmanan, A., Lu, G., Bourdeau, RW., Shapiro, MG., “Recombinantly Expressed Gas Vesicles as Nanoscale Contrast Agents for Ultrasound and Hyperpolarized MRI“, AIChE Journal, Futures Issue: Biomolecular Engineering, 2018 (Invited)
Maresca, D., Lakshmanan, A., Abedi, M., Bar-Zion, A., Farhadi, A., Lu, GJ., Szablowski, JO., Wu, D., Yoo, S., Shapiro, MG., “Biomolecular Ultrasound and Sonogenetics“, Annual Review of Chemical and Biomolecular Engineering, 2018
Lakshmanan, A.†, Lu, GJ.†, Farhadi, A.†, Nety, SP.†, Lee-Gosselin, A., Maresca, D., Bourdeau, RW., Yin, M., Kunth, M., Witte, C., Foster FS., Schröder, L., and Shapiro MG., “Preparation of Biogenic Gas Vesicle Nanostructures for Use as Contrast Agents for Ultrasound and MRI”, Nature Protocols, 2017
Piraner, DI., Farhadi, A., Davis, HC., Wu, D., Maresca, D., Szablowski, JO., Shapiro MG., “Going Deeper: Biomolecular Tools for Acoustic and Magnetic Imaging and Control of Cellular Function“, Biochemistry, 2017
Le Floc’h, J., Bilton, H., Yin, M., Zlitni, A., Farhadi, A., Shapiro MG., Valliant, J., Foster SF., “In vivo Biodistribution of Radiolabeled Acoustic Protein Nanostructures”, Molecular Imaging and Biology, 2017
Lakshmanan, A., Farhadi, A., Nety, SP., Lee-Gosselin, A., Bourdeau, RW., Maresca, D., Shapiro, MG., “Genetic Engineering of Acoustic Nanostructures for Multimodal Molecular Imaging“, ACS Nano, 2016
Farhadi, A., Roxin, A., Wilson, B., and Zheng, G., “Nano-Enabled SERS Reporting Photosensitizers“, Theranostics, 2015
Farhadi, A., Zheng, G., “Nanoworms Shed Synthetic Urinary Biomarkers to Aid the Detection of Thrombin Activity”, Nanomedicine, 2014
Tam, N., McVeigh, P., Macdonald, TD., Farhadi, A., Wilson, B., Zheng, G., “Porphyrin-Lipid Stabilized Gold Nanoparticles for Surface Enhanced Raman Scattering Based Imaging“, Bioconjugate Chemistry, 2012
Wheeldon, I., Farhadi, A., Bick, A., Jabbari, E., Khademhosseini, A., “Nanoscale Tissue Engineering: Spatial Control Over Cell-Materials Interactions“, Nanotechnology, 2010